X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=screenseqscommand.h;h=b0d7c7c18f3852dd40395b0f699749fc885cc14b;hb=e8e13c129ba8184ec5932a090773f353f3ae3406;hp=771113da1bda0ee34859faaa39b2fe7be1bc2672;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96;p=mothur.git

diff --git a/screenseqscommand.h b/screenseqscommand.h
index 771113d..b0d7c7c 100644
--- a/screenseqscommand.h
+++ b/screenseqscommand.h
@@ -44,6 +44,7 @@ private:
 
 	int screenNameGroupFile(set<string>);
 	int screenGroupFile(set<string>);
+    int screenCountFile(set<string>);
 	int screenAlignReport(set<string>);
 	int screenQual(set<string>);
 	int screenTaxonomy(set<string>);
@@ -56,7 +57,7 @@ private:
 	#endif
 
 	bool abort;
-	string fastafile, namefile, groupfile, alignreport, outputDir, qualfile, taxonomy;
+	string fastafile, namefile, groupfile, alignreport, outputDir, qualfile, taxonomy, countfile;
 	int startPos, endPos, maxAmbig, maxHomoP, minLength, maxLength, processors, criteria;
 	vector<string> outputNames;
 	vector<string> optimize;