X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=screenseqscommand.h;fp=screenseqscommand.h;h=602326c42e2ff75afbeb8050479cf7e188b8b634;hb=86c838c428a9e7d26f902f5492738241fa72c4e7;hp=b8ab242e187b2f1b0fccc8b087e7c17f2cc0c903;hpb=6fa1725004b26c0af737a684462a55c40dcb11a4;p=mothur.git

diff --git a/screenseqscommand.h b/screenseqscommand.h
index b8ab242..602326c 100644
--- a/screenseqscommand.h
+++ b/screenseqscommand.h
@@ -42,6 +42,7 @@ private:
 	int screenNameGroupFile(set<string>);
 	int screenGroupFile(set<string>);
 	int screenAlignReport(set<string>);
+	int screenQual(set<string>);
 	
 	int driver(linePair*, string, string, string, set<string>&);
 	int createProcesses(string, string, string, set<string>&);
@@ -51,7 +52,7 @@ private:
 	#endif
 
 	bool abort;
-	string fastafile, namefile, groupfile, alignreport, outputDir;
+	string fastafile, namefile, groupfile, alignreport, outputDir, qualfile;
 	int startPos, endPos, maxAmbig, maxHomoP, minLength, maxLength, processors, criteria;
 	vector<string> outputNames;
 	vector<string> optimize;