X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=screenseqscommand.h;fp=screenseqscommand.h;h=49d992ac193c7aa42ad4492c9190bda40671fc0b;hb=3094cb29c613d9687e861e1d0cf9104b7141d24e;hp=87c8beef870b82a95f79bfddcdacba8ab2a1d47e;hpb=e0dc0bcef2a0f7e1f63abb531dbb1ad533da98ca;p=mothur.git

diff --git a/screenseqscommand.h b/screenseqscommand.h
index 87c8bee..49d992a 100644
--- a/screenseqscommand.h
+++ b/screenseqscommand.h
@@ -45,6 +45,7 @@ private:
 	int screenGroupFile(set<string>);
 	int screenAlignReport(set<string>);
 	int screenQual(set<string>);
+	int screenTaxonomy(set<string>);
 	
 	int driver(linePair*, string, string, string, set<string>&);
 	int createProcesses(string, string, string, set<string>&);
@@ -54,7 +55,7 @@ private:
 	#endif
 
 	bool abort;
-	string fastafile, namefile, groupfile, alignreport, outputDir, qualfile;
+	string fastafile, namefile, groupfile, alignreport, outputDir, qualfile, taxonomy;
 	int startPos, endPos, maxAmbig, maxHomoP, minLength, maxLength, processors, criteria;
 	vector<string> outputNames;
 	vector<string> optimize;