X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=screenseqscommand.cpp;h=ff5f4650c73d3b71c6e76f7398603e711f788859;hb=aca78ed4a47dff8672ea8fd93cef0dfbaf0f7495;hp=bf702e13534f507576bee7c24bcf6462aacb7ca3;hpb=ac03f1f6c27b5bfdf2cfb6d45c3667c3e0281f51;p=mothur.git

diff --git a/screenseqscommand.cpp b/screenseqscommand.cpp
index bf702e1..ff5f465 100644
--- a/screenseqscommand.cpp
+++ b/screenseqscommand.cpp
@@ -1433,7 +1433,7 @@ int ScreenSeqsCommand::createProcessesContigsSummary(vector<int>& oLength, vecto
         
 		//loop through and create all the processes you want
 		while (process != processors) {
-			int pid = fork();
+			pid_t pid = fork();
 			
 			if (pid > 0) {
 				processIDS.push_back(pid);  //create map from line number to pid so you can append files in correct order later
@@ -1443,7 +1443,7 @@ int ScreenSeqsCommand::createProcessesContigsSummary(vector<int>& oLength, vecto
 				
 				//pass numSeqs to parent
 				ofstream out;
-				string tempFile = contigsreport + toString(getpid()) + ".num.temp";
+				string tempFile = contigsreport + m->mothurGetpid(process) + ".num.temp";
 				m->openOutputFile(tempFile, out);
 				
 				out << num << endl;
@@ -1703,7 +1703,7 @@ int ScreenSeqsCommand::createProcessesAlignSummary(vector<float>& sims, vector<f
         
 		//loop through and create all the processes you want
 		while (process != processors) {
-			int pid = fork();
+			pid_t pid = fork();
 			
 			if (pid > 0) {
 				processIDS.push_back(pid);  //create map from line number to pid so you can append files in correct order later
@@ -1713,7 +1713,7 @@ int ScreenSeqsCommand::createProcessesAlignSummary(vector<float>& sims, vector<f
 				
 				//pass numSeqs to parent
 				ofstream out;
-				string tempFile = alignreport + toString(getpid()) + ".num.temp";
+				string tempFile = alignreport + m->mothurGetpid(process) + ".num.temp";
 				m->openOutputFile(tempFile, out);
 				
 				out << num << endl;
@@ -1986,7 +1986,7 @@ int ScreenSeqsCommand::createProcessesCreateSummary(vector<int>& startPosition,
 				
 		//loop through and create all the processes you want
 		while (process != processors) {
-			int pid = fork();
+			pid_t pid = fork();
 			
 			if (pid > 0) {
 				processIDS.push_back(pid);  //create map from line number to pid so you can append files in correct order later
@@ -1996,7 +1996,7 @@ int ScreenSeqsCommand::createProcessesCreateSummary(vector<int>& startPosition,
 				
 				//pass numSeqs to parent
 				ofstream out;
-				string tempFile = fastafile + toString(getpid()) + ".num.temp";
+				string tempFile = fastafile + m->mothurGetpid(process) + ".num.temp";
 				m->openOutputFile(tempFile, out);
 				
 				out << num << endl;
@@ -2526,17 +2526,17 @@ int ScreenSeqsCommand::createProcesses(string goodFileName, string badAccnos, st
 				
 		//loop through and create all the processes you want
 		while (process != processors) {
-			int pid = fork();
+			pid_t pid = fork();
 			
 			if (pid > 0) {
 				processIDS.push_back(pid);  //create map from line number to pid so you can append files in correct order later
 				process++;
 			}else if (pid == 0){
-				num = driver(lines[process], goodFileName + toString(getpid()) + ".temp", badAccnos + toString(getpid()) + ".temp", filename, badSeqNames);
+				num = driver(lines[process], goodFileName + m->mothurGetpid(process) + ".temp", badAccnos + m->mothurGetpid(process) + ".temp", filename, badSeqNames);
 				
 				//pass numSeqs to parent
 				ofstream out;
-				string tempFile = filename + toString(getpid()) + ".num.temp";
+				string tempFile = filename + m->mothurGetpid(process) + ".num.temp";
 				m->openOutputFile(tempFile, out);
 				out << num << endl;
 				out.close();