X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sam_view.c;h=b6896c908cb367c1083eb3fbe994fe3c83a753f4;hb=d496e5903f314d88505b7947dd39e3e7234dd890;hp=f198591e9aabbe44f67ee35c1497d2e73d0a3d7d;hpb=bbf6f360e153cf98d091afdaa31717448cde21e9;p=samtools.git diff --git a/sam_view.c b/sam_view.c index f198591..b6896c9 100644 --- a/sam_view.c +++ b/sam_view.c @@ -290,6 +290,7 @@ static int usage(int is_long_help) fprintf(stderr, " -X output FLAG in string (samtools-C specific)\n"); fprintf(stderr, " -c print only the count of matching records\n"); fprintf(stderr, " -B collapse the backward CIGAR operation\n"); + fprintf(stderr, " -@ INT number of BAM compression threads [0]\n"); fprintf(stderr, " -L FILE output alignments overlapping the input BED FILE [null]\n"); fprintf(stderr, " -t FILE list of reference names and lengths (force -S) [null]\n"); fprintf(stderr, " -T FILE reference sequence file (force -S) [null]\n");