X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sam_header.h;h=50456168a638f4a41db86b38b001ed648805f8cc;hb=d0e30eec1158752010659982342a611fc91ae8e3;hp=442a9899c66b90ed547b6d7ebfd0980d5ceb1171;hpb=bb9a8233e309f483c565dac4cb7193decdf324a5;p=samtools.git

diff --git a/sam_header.h b/sam_header.h
index 442a989..5045616 100644
--- a/sam_header.h
+++ b/sam_header.h
@@ -1,48 +1,23 @@
 #ifndef __SAM_HEADER_H__
 #define __SAM_HEADER_H__
 
-#include "khash.h"
-KHASH_MAP_INIT_STR(str,const char *)
+#ifdef __cplusplus
+extern "C" {
+#endif
 
-// HeaderDict is a list_t of header lines. Each HeaderLine holds a list of tags.
-struct _list_t
-{
-    struct _list_t *next;
-    void *data;
-};
-typedef struct _list_t list_t;
-typedef list_t HeaderDict;
+	void *sam_header_parse2(const char *headerText);
+	void *sam_header_merge(int n, const void **dicts);
+	void sam_header_free(void *header);
+	char *sam_header_write(const void *headerDict);   // returns a newly allocated string
 
-typedef struct
-{
-    char key[2];
-    char *value;
-}
-HeaderTag;
+	void *sam_header2tbl(const void *dict, char type[2], char key_tag[2], char value_tag[2]);
+	const char *sam_tbl_get(void *h, const char *key);
+	int sam_tbl_size(void *h);
+	int sam_tbl_pair(void *h, char **keys, char **vals);
+	void sam_tbl_destroy(void *h);
 
-typedef struct
-{
-    char type[2];
-    list_t *tags;
+#ifdef __cplusplus
 }
-HeaderLine;
-
-
-void debug(const char *format, ...);
-void error(const char *format, ...);
-
-HeaderDict *sam_header_parse(const char *headerText);
-HeaderDict *sam_header_merge(int n, const HeaderDict **dicts);
-void sam_header_free(HeaderDict *header);
-char *sam_header_write(const HeaderDict *headerDict);   // returns a newly allocated string
-
-khash_t(str) *sam_header_lookup_table(const HeaderDict *dict, char type[2], char key_tag[2], char value_tag[2]);
-
-list_t *list_append(list_t *root, void *data);
-void list_free(list_t *root);
-
-//char *sam_header_get(const HeaderDict *d, char type[2], int i, char tag[2]);  
-//int sam_header_ins(HeaderDict *d, char tp[2], int i, char tg[2], const char *s);  
-//int sam_header_del(HeaderDict *d, char type[2], int i, char tag[2]);  
+#endif
 
 #endif