X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sam%2Ferrmod.h;h=32c07b67b625924230689fca1d16da4f49e5938b;hb=799735d94b6f8c5c34b828bccdd3408f4b38a6ef;hp=e3e9a90540cee5a78bb603956db20e7861555c2d;hpb=2e4fdfb2673d928779b04bc5ebe8fcb304a45eaa;p=rsem.git

diff --git a/sam/errmod.h b/sam/errmod.h
index e3e9a90..32c07b6 100644
--- a/sam/errmod.h
+++ b/sam/errmod.h
@@ -12,6 +12,13 @@ typedef struct {
 
 errmod_t *errmod_init(float depcorr);
 void errmod_destroy(errmod_t *em);
+
+/*
+	n: number of bases
+	m: maximum base
+	bases[i]: qual:6, strand:1, base:4
+	q[i*m+j]: phred-scaled likelihood of (i,j)
+ */
 int errmod_cal(const errmod_t *em, int n, int m, uint16_t *bases, float *q);
 
 #endif