X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sabundvector.hpp;fp=sabundvector.hpp;h=f45ef609515321a74b9bbf98d7f7b4fcbdb9512d;hb=20a2d0350a737a434c89f303662d64a8eeea7b05;hp=0000000000000000000000000000000000000000;hpb=bbb5879a7e566935c23d63d42bb945072424b939;p=mothur.git

diff --git a/sabundvector.hpp b/sabundvector.hpp
new file mode 100644
index 0000000..f45ef60
--- /dev/null
+++ b/sabundvector.hpp
@@ -0,0 +1,48 @@
+#ifndef SABUND_H
+#define SABUND_H
+
+using namespace std;
+
+#include "datavector.hpp"
+#include "rabundvector.hpp"
+#include "ordervector.hpp"
+
+class SAbundVector : public DataVector {
+	
+public:
+	SAbundVector();
+	SAbundVector(int);
+//	SAbundVector(const SAbundVector&);
+	SAbundVector(string, vector<int>);
+	SAbundVector(const SAbundVector& rv) : DataVector(rv.label), data(rv.data), maxRank(rv.maxRank), numBins(rv.numBins), numSeqs(rv.numSeqs){};
+	SAbundVector(ifstream&);
+	~SAbundVector(){};
+
+	int getNumBins();	
+	int getNumSeqs();	
+	int getMaxRank();	
+	
+	void set(int, int);
+	int get(int);
+	void push_back(int);
+	void resize(int);
+	int size();
+
+	void print(ostream&);
+	void print(string, ostream&);
+		
+	RAbundVector getRAbundVector();	
+	SAbundVector getSAbundVector();
+	OrderVector getOrderVector(map<string,int>*);
+	
+private:
+	vector<int> data;
+//	bool needToUpdate;
+//	void updateStats();
+	int maxRank;
+	int numBins;
+	int numSeqs;
+
+};
+
+#endif