X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=sabundvector.hpp;fp=sabundvector.hpp;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=666e94f4db598b9bf1589bf8288fed75e221bdc3;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/sabundvector.hpp b/sabundvector.hpp
deleted file mode 100644
index 666e94f..0000000
--- a/sabundvector.hpp
+++ /dev/null
@@ -1,64 +0,0 @@
-#ifndef SABUND_H
-#define SABUND_H
-
-#include "datavector.hpp"
-#include "rabundvector.hpp"
-#include "ordervector.hpp"
-#include "calculator.h"
-
-
-/*  Data Structure for a sabund file.
-    This class is a child to datavector.  It represents OTU information at a certain distance. 
-	A sabundvector can be converted into and ordervector, listvector or rabundvector.
-	Each member of the internal container "data" represents the number of OTU's with that many members, but staring at 1.
-	So data[1] = 2, because there are two OTUs with 1 member.
-	example: listvector		=	a,b,c,d,e,f		g,h,i		j,k		l		m  
-			 rabundvector	=	6				3			2		1		1
-			 sabundvector	=	2		1		1		0		0		1
-			 ordervector	=	1	1	1	1	1	1	2	2	2	3	3	4	5 */
-
-
-class SAbundVector : public DataVector {
-	
-public:
-	SAbundVector();
-	SAbundVector(int);
-//	SAbundVector(const SAbundVector&);
-	SAbundVector(vector<int>, int, int, int);
-	SAbundVector(string, vector<int>);
-	SAbundVector(const SAbundVector& rv) : DataVector(rv.label), data(rv.data), maxRank(rv.maxRank), numBins(rv.numBins), numSeqs(rv.numSeqs){};
-	SAbundVector(ifstream&);
-	~SAbundVector(){};
-
-	int getNumBins();	
-	int getNumSeqs();	
-	int getMaxRank();	
-	
-	void set(int, int);
-	int get(int);
-	void push_back(int);
-	void quicksort();
-	int sum();
-	void resize(int);
-	int size();
-	void clear();
-
-	void print(ostream&);
-	void print(string, ostream&);
-		
-	RAbundVector getRAbundVector();		
-	SAbundVector getSAbundVector();
-	OrderVector getOrderVector(map<string,int>*);
-	
-private:
-	vector<int> data;
-//	bool needToUpdate;
-//	void updateStats();
-	
-	int maxRank;
-	int numBins;
-	int numSeqs;
-
-};
-
-#endif