X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=rsem-generate-ngvector;h=dc874a916157576c5b8e5653e389b02765cb8576;hb=0f8fbc39759d8a8a4fa755903b8bde403b0da6c9;hp=0f44fd4daa2f153e60d3874a09c948aebc606b62;hpb=52f1bd6f44f9b2630b839f192fb9ece18581983b;p=rsem.git

diff --git a/rsem-generate-ngvector b/rsem-generate-ngvector
index 0f44fd4..dc874a9 100755
--- a/rsem-generate-ngvector
+++ b/rsem-generate-ngvector
@@ -1,8 +1,9 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 
 use Getopt::Long;
 use Pod::Usage;
-use File::Basename;
+use FindBin;
+use lib $FindBin::Bin;
 use strict;
 
 use rsem_perl_utils;
@@ -16,7 +17,7 @@ GetOptions("k=i" => \$k,
 pod2usage(-verbose => 2) if ($help == 1);
 pod2usage(-msg => "Invalid number of arguments!", -exitval => 2, -verbose => 2) if (scalar(@ARGV) != 2);
 
-my ($fn, $dir, $suf) = fileparse($0);
+my $dir = "$FindBin::Bin/";
 my $command = "";
 
 $command = $dir."EBSeq/rsem-for-ebseq-calculate-clustering-info $k $ARGV[0] $ARGV[1].ump";
@@ -33,11 +34,7 @@ rsem-generate-ngvector
 
 =head1 SYNOPSIS
 
-=over
-
- rsem-generate-ngvector [options] input_fasta_file output_name
-
-=back
+rsem-generate-ngvector [options] input_fasta_file output_name
 
 =head1 ARGUMENTS