X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=rsem-for-ebseq-generate-ngvector-from-clustering-info;fp=rsem-for-ebseq-generate-ngvector-from-clustering-info;h=0000000000000000000000000000000000000000;hb=9c2e46183a19d661f0a618a8eabe8ce1f6a8e2d6;hp=312dbfa33c77339b530e67362e14e391e75f4259;hpb=7777bfc71742d4e239d1297d2e3de058895f4ce1;p=rsem.git

diff --git a/rsem-for-ebseq-generate-ngvector-from-clustering-info b/rsem-for-ebseq-generate-ngvector-from-clustering-info
deleted file mode 100755
index 312dbfa..0000000
--- a/rsem-for-ebseq-generate-ngvector-from-clustering-info
+++ /dev/null
@@ -1,18 +0,0 @@
-#!/usr/bin/env Rscript
-
-argv <- commandArgs(TRUE)
-if (length(argv) != 2) {
-  cat("Usage: rsem-for-ebseq-generate-ngvector-from-clustering-info input_file output_file\n")
-  q(status = 1)
-}
-
-data <- read.table(file = argv[1], stringsAsFactors = F)
-idx <- data[,2] >= 0
-kmr <- kmeans(data[idx, 2], 3)
-order <- order(kmr$centers)
-
-ngvec <- rep(0, length(idx))
-ngvec[idx] <- order[kmr$cluster]
-ngvec[!idx] <- 3
-
-write.table(ngvec, file = argv[2], row.names = F, col.names = F)