X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=rsem-calculate-expression;h=06604d96a8c415b4eaeaf9e74854d6bf772a8d17;hb=53e8bbb15e0bfed6a0caae7b5ba6777a9a942266;hp=746fb7e510006d9bc238bf5678adddac7c3d83c2;hpb=3ec78aa9af79921c44d62b65f88865a4b65880be;p=rsem.git

diff --git a/rsem-calculate-expression b/rsem-calculate-expression
index 746fb7e..06604d9 100755
--- a/rsem-calculate-expression
+++ b/rsem-calculate-expression
@@ -286,6 +286,7 @@ if ($genBamF) {
 
 if ($calcCI) {
     $command = $dir."rsem-run-gibbs $refName $sampleName $sampleToken $BURNIN $CHAINLEN $SAMPLEGAP";
+#    $command .= " -p $nThreads";
     if ($quiet) { $command .= " -q"; }
     print "$command\n";
     $status = system($command);
@@ -660,3 +661,5 @@ Assume the path to the bowtie executables is in the user's PATH environment vari
                            mmliver_paired_end_quals
 
 =cut
+
+#  LocalWords:  usr