X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=reversecommand.h;h=bd8d1194ff095fa5fecff1b51570520b849dbf9a;hb=74d3aaf0f85080ea3cfb1f1871e706bab9f48392;hp=2a996e9fe02d6e05511ea543ef0d9dd4e507fbdb;hpb=0470f6d037aacb3563c3f7010708120a4a67d4e6;p=mothur.git

diff --git a/reversecommand.h b/reversecommand.h
index 2a996e9..bd8d119 100644
--- a/reversecommand.h
+++ b/reversecommand.h
@@ -10,25 +10,26 @@
  *
  */
 
-#include "mothur.h"
 #include "command.hpp"
-#include "globaldata.hpp"
 
 class ReverseSeqsCommand : public Command {
 public:
 	ReverseSeqsCommand(string);
+	ReverseSeqsCommand();
 	~ReverseSeqsCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();
 	void help();
 	
 private:
-	GlobalData* globaldata;	
-	OptionParser* parser;
-	map<string, string> parameters;
-	map<string, string>::iterator it;
-	bool abort;
-	string fasta;
 
+	bool abort;
+	string fastaFileName, qualFileName, outputDir;
+	vector<string> outputNames;
+	map<string, vector<string> > outputTypes;
 	
 };