X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=reversecommand.h;h=bd8d1194ff095fa5fecff1b51570520b849dbf9a;hb=264c8a3c759d9a999c485236e98dac98d4f0db5f;hp=46211a5e008d9194d8c18cdaed0bbeed04afb4e5;hpb=986663e2220f6b043ee83d1699cfa081dc49cbed;p=mothur.git

diff --git a/reversecommand.h b/reversecommand.h
index 46211a5..bd8d119 100644
--- a/reversecommand.h
+++ b/reversecommand.h
@@ -10,18 +10,26 @@
  *
  */
 
-#include "mothur.h"
 #include "command.hpp"
-#include "globaldata.hpp"
 
 class ReverseSeqsCommand : public Command {
 public:
+	ReverseSeqsCommand(string);
 	ReverseSeqsCommand();
 	~ReverseSeqsCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();
+	void help();
 	
 private:
-	GlobalData* globaldata;	
+
+	bool abort;
+	string fastaFileName, qualFileName, outputDir;
+	vector<string> outputNames;
+	map<string, vector<string> > outputTypes;
 	
 };