X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=reversecommand.h;h=2c7a9e4ee025e3ce8e94f328eb2cb1e676611cf6;hb=035f86272c776e1cccaa47021e26782e49cd41e7;hp=b47ee3a51d614c84f746a1f231894809059bcad3;hpb=cd37904452dc95b183ff313ff05720c562902487;p=mothur.git

diff --git a/reversecommand.h b/reversecommand.h
index b47ee3a..2c7a9e4 100644
--- a/reversecommand.h
+++ b/reversecommand.h
@@ -10,20 +10,31 @@
  *
  */
 
-#include "mothur.h"
 #include "command.hpp"
 
 class ReverseSeqsCommand : public Command {
 public:
 	ReverseSeqsCommand(string);
-	~ReverseSeqsCommand();
-	int execute();
-	void help();
+	ReverseSeqsCommand();
+	~ReverseSeqsCommand() {}
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "reverse.seqs";			}
+	string getCommandCategory()		{ return "Sequence Processing";		}
+	string getOutputFileNameTag(string, string);
+	string getHelpString();	
+	string getCitation() { return "http://www.mothur.org/wiki/Reverse.seqs"; }
+	string getDescription()		{ return "outputs a fasta file containing the reverse-complements"; }
+
+	
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }	
 	
 private:
 
 	bool abort;
-	string fasta;
+	string fastaFileName, qualFileName, outputDir;
+	vector<string> outputNames;
 	
 };