X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=reversecommand.h;fp=reversecommand.h;h=0d1da8801adc5a2b5e5bfe9cf81ef58789de534c;hb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;hp=bd8d1194ff095fa5fecff1b51570520b849dbf9a;hpb=36a867cbd85d9c276d3c8d13f25a150bbbe2466b;p=mothur.git

diff --git a/reversecommand.h b/reversecommand.h
index bd8d119..0d1da88 100644
--- a/reversecommand.h
+++ b/reversecommand.h
@@ -16,20 +16,21 @@ class ReverseSeqsCommand : public Command {
 public:
 	ReverseSeqsCommand(string);
 	ReverseSeqsCommand();
-	~ReverseSeqsCommand();
-	vector<string> getRequiredParameters();
-	vector<string> getValidParameters();
-	vector<string> getRequiredFiles();
-	map<string, vector<string> > getOutputFiles() { return outputTypes; }
-	int execute();
-	void help();
+	~ReverseSeqsCommand() {}
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "reverse.seqs";			}
+	string getCommandCategory()		{ return "Sequence Processing";		}
+	string getHelpString();	
+	
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }	
 	
 private:
 
 	bool abort;
 	string fastaFileName, qualFileName, outputDir;
 	vector<string> outputNames;
-	map<string, vector<string> > outputTypes;
 	
 };