X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=reversecommand.cpp;h=c664ad7548b52f8966c799749f382d31169f564d;hb=4894e83a1febebfd2e58af71336592d9edb34554;hp=ea2ddeb8e718b44363409f0b332827feec41d6a9;hpb=7bf9a81bba76538ecaf351ae208de3da4bf1b6dd;p=mothur.git

diff --git a/reversecommand.cpp b/reversecommand.cpp
index ea2ddeb..c664ad7 100644
--- a/reversecommand.cpp
+++ b/reversecommand.cpp
@@ -166,7 +166,7 @@ int ReverseSeqsCommand::execute(){
 			m->openOutputFile(fastaReverseFileName, outFASTA);
 			
 			while(!inFASTA.eof()){
-				if (m->control_pressed) {  inFASTA.close();  outFASTA.close(); remove(fastaReverseFileName.c_str()); return 0; }
+				if (m->control_pressed) {  inFASTA.close();  outFASTA.close(); m->mothurRemove(fastaReverseFileName); return 0; }
 				 
 				Sequence currSeq(inFASTA);  m->gobble(inFASTA);
 				if (currSeq.getName() != "") {
@@ -194,7 +194,7 @@ int ReverseSeqsCommand::execute(){
 			m->openOutputFile(qualReverseFileName, outQual);
 
 			while(!inQual.eof()){
-				if (m->control_pressed) {  inQual.close();  outQual.close(); remove(qualReverseFileName.c_str()); return 0; }
+				if (m->control_pressed) {  inQual.close();  outQual.close(); m->mothurRemove(qualReverseFileName); return 0; }
 				currQual = QualityScores(inQual);  m->gobble(inQual);
 				currQual.flipQScores();	
 				currQual.printQScores(outQual);
@@ -204,7 +204,7 @@ int ReverseSeqsCommand::execute(){
 			outputNames.push_back(qualReverseFileName); outputTypes["qfile"].push_back(qualReverseFileName);
 		}
 		
-		if (m->control_pressed) {  remove(qualReverseFileName.c_str()); remove(fastaReverseFileName.c_str()); return 0; }
+		if (m->control_pressed) {  m->mothurRemove(qualReverseFileName); m->mothurRemove(fastaReverseFileName); return 0; }
 		
 		//set fasta file as new current fastafile
 		string current = "";