X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=reportfile.cpp;fp=reportfile.cpp;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=8e3b746159a02da7082749bea103222540e0c4a6;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/reportfile.cpp b/reportfile.cpp
deleted file mode 100644
index 8e3b746..0000000
--- a/reportfile.cpp
+++ /dev/null
@@ -1,83 +0,0 @@
-/*
- *  reportfile.cpp
- *  Mothur
- *
- *  Created by Pat Schloss on 12/19/10.
- *  Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
-
-#include "mothur.h"
-#include "mothurout.h"
-#include "reportfile.h"
-
-/**************************************************************************************************/
-
-ReportFile::ReportFile(){
-	try {
-		m = MothurOut::getInstance();
-	}
-	catch(exception& e) {
-		m->errorOut(e, "ReportFile", "ReportFile");
-		exit(1);
-	}							
-}
-
-/**************************************************************************************************/
-
-ReportFile::ReportFile(ifstream& repFile, string repFileName){
-	try {		
-		m = MothurOut::getInstance();
-		
-		m->openInputFile(repFileName, repFile);
-		m->getline(repFile);
-	}
-	catch(exception& e) {
-		m->errorOut(e, "ReportFile", "ReportFile");
-		exit(1);
-	}							
-}
-
-
-/**************************************************************************************************/
-
-ReportFile::ReportFile(ifstream& repFile){
-	try {
-		
-		m = MothurOut::getInstance();
-		
-		repFile >> queryName;
-		repFile >> queryLength;
-		repFile >> templateName;
-		repFile >> templateLength;
-		repFile >> searchMethod;
-		repFile >> dummySearchScore;
-		repFile >> alignmentMethod;
-		repFile >> queryStart;
-		repFile >> queryEnd;
-		repFile >> templateStart;
-		repFile >> templateEnd;
-		repFile >> pairwiseAlignmentLength;
-		repFile >> gapsInQuery;
-		repFile >> gapsInTemplate;
-		repFile >> longestInsert;
-		repFile >> simBtwnQueryAndTemplate;
-
-		if(dummySearchScore != "nan"){
-			istringstream stream(dummySearchScore);
-			stream >> searchScore;
-		}
-		else{
-			searchScore = 0;
-		}
-		
-		m->gobble(repFile);		
-	}
-	catch(exception& e) {
-		m->errorOut(e, "ReportFile", "ReportFile");
-		exit(1);
-	}							
-	
-}
-
-/**************************************************************************************************/