X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=removeseqscommand.h;h=e26e751032402cd39dac933acf3f57814ab2fc0f;hb=9b53f130ac9af5e95444ce2e817fce25ed19ff03;hp=474951a9feaee7d497417cf2a03f206367056241;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96;p=mothur.git

diff --git a/removeseqscommand.h b/removeseqscommand.h
index 474951a..e26e751 100644
--- a/removeseqscommand.h
+++ b/removeseqscommand.h
@@ -34,13 +34,15 @@ class RemoveSeqsCommand : public Command {
 	
 	private:
 		set<string> names;
-		string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, taxfile, qualfile, outputDir;
+		string accnosfile, fastafile, namefile, groupfile, countfile, alignfile, listfile, taxfile, qualfile, outputDir;
 		bool abort, dups;
 		vector<string> outputNames;
+        map<string, string> uniqueMap;
 		
 		int readFasta();
 		int readName();
 		int readGroup();
+        int readCount();
 		int readAlign();
 		int readList();
 		int readTax();