X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=removeseqscommand.h;h=8238c649489e3dff52371fa06ab8e2f49b93258f;hb=f07bf12e0d04340698aff7a36d2fee7c959ffe59;hp=434983e8e4c5909be8a083cf8251cee34b0d27ce;hpb=c53c53b0280452e1c3a087fbf807b2e508cd66c4;p=mothur.git

diff --git a/removeseqscommand.h b/removeseqscommand.h
index 434983e..8238c64 100644
--- a/removeseqscommand.h
+++ b/removeseqscommand.h
@@ -23,14 +23,17 @@ class RemoveSeqsCommand : public Command {
 		
 	private:
 		set<string> names;
-		string accnosfile, fastafile, namefile, groupfile, alignfile;
-		bool abort;
+		string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, taxfile, outputDir;
+		bool abort, dups;
+		vector<string> outputNames;
 		
-		void readFasta();
-		void readName();
-		void readGroup();
-		void readAlign();
+		int readFasta();
+		int readName();
+		int readGroup();
+		int readAlign();
 		void readAccnos();
+		int readList();
+		int readTax();
 		
 };