X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=removeseqscommand.h;h=8238c649489e3dff52371fa06ab8e2f49b93258f;hb=058715887611e00dc18324cb0bd4a4a8472530b3;hp=ddda08ce9bbfe7f4bc1e6a5aa55e8028667ade37;hpb=74844a60d80c6dd06e3fb02ee9b928424f9019b0;p=mothur.git diff --git a/removeseqscommand.h b/removeseqscommand.h index ddda08c..8238c64 100644 --- a/removeseqscommand.h +++ b/removeseqscommand.h @@ -23,16 +23,17 @@ class RemoveSeqsCommand : public Command { private: set names; - string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, outputDir; + string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, taxfile, outputDir; bool abort, dups; vector outputNames; - void readFasta(); - void readName(); - void readGroup(); - void readAlign(); + int readFasta(); + int readName(); + int readGroup(); + int readAlign(); void readAccnos(); - void readList(); + int readList(); + int readTax(); };