X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=removeseqscommand.h;h=474951a9feaee7d497417cf2a03f206367056241;hb=6c2b1e530a5c0bb87040e58a3e410097acdfcc3d;hp=b89a509c5f76971d9df9de9a3fd4e9113a70b816;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git diff --git a/removeseqscommand.h b/removeseqscommand.h index b89a509..474951a 100644 --- a/removeseqscommand.h +++ b/removeseqscommand.h @@ -23,9 +23,11 @@ class RemoveSeqsCommand : public Command { vector setParameters(); string getCommandName() { return "remove.seqs"; } string getCommandCategory() { return "Sequence Processing"; } - string getHelpString(); + string getOutputFileNameTag(string, string); + string getHelpString(); string getCitation() { return "http://www.mothur.org/wiki/Remove.seqs"; } - + string getDescription() { return "removes sequences from a list, fasta, name, group, alignreport, quality or taxonomy file"; } + int execute(); void help() { m->mothurOut(getHelpString()); } @@ -40,7 +42,6 @@ class RemoveSeqsCommand : public Command { int readName(); int readGroup(); int readAlign(); - void readAccnos(); int readList(); int readTax(); int readQual();