X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=removeseqscommand.h;fp=removeseqscommand.h;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=df96e4514bc84787ad901e137bbc794588681705;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/removeseqscommand.h b/removeseqscommand.h
deleted file mode 100644
index df96e45..0000000
--- a/removeseqscommand.h
+++ /dev/null
@@ -1,52 +0,0 @@
-#ifndef REMOVESEQSCOMMAND_H
-#define REMOVESEQSCOMMAND_H
-
-/*
- *  removeseqscommand.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 7/8/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
- 
-#include "command.hpp"
-
-class RemoveSeqsCommand : public Command {
-	
-	public:
-	
-		RemoveSeqsCommand(string);	
-		RemoveSeqsCommand();
-		~RemoveSeqsCommand(){}
-	
-		vector<string> setParameters();
-		string getCommandName()			{ return "remove.seqs";				}
-		string getCommandCategory()		{ return "Sequence Processing";		}
-		string getHelpString();	
-		string getCitation() { return "http://www.mothur.org/wiki/Remove.seqs"; }
-		string getDescription()		{ return "removes sequences from a list, fasta, name, group, alignreport, quality or taxonomy file"; }
-
-		int execute(); 
-		void help() { m->mothurOut(getHelpString()); }	
-	
-	
-	private:
-		set<string> names;
-		string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, taxfile, qualfile, outputDir;
-		bool abort, dups;
-		vector<string> outputNames;
-		
-		int readFasta();
-		int readName();
-		int readGroup();
-		int readAlign();
-		void readAccnos();
-		int readList();
-		int readTax();
-		int readQual();
-		
-};
-
-#endif
-