X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=removeotuscommand.h;h=a7fcf0eaa1316203f0ec65c79094a2ef6f809ac3;hb=70491a12902e89b85cfa6b44a7b7fbe066ee2ac1;hp=6a7cf8a1e55fa1a5fe5915b4cb6da1c3150729ef;hpb=a44542a3c740cf957cff72ac71742f2fe48b0eaf;p=mothur.git

diff --git a/removeotuscommand.h b/removeotuscommand.h
index 6a7cf8a..a7fcf0e 100644
--- a/removeotuscommand.h
+++ b/removeotuscommand.h
@@ -25,7 +25,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "remove.otus";				}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Remove.otus"; }
 	string getDescription()		{ return "outputs a new list file containing the otus NOT containing sequences from the groups specified"; }
 
@@ -38,7 +40,6 @@ private:
 	vector<string> outputNames, Groups;
 	GroupMap* groupMap;
 	
-	void readAccnos();
 	int readListGroup();
 	int processList(ListVector*&, GroupMap*&, ofstream&, ofstream&, bool&);