X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=removeotuscommand.h;h=3a52a39f120a0d2af788478df3a590c64a7f9306;hb=006601d68abe8d0061f77e8d28323b160750e343;hp=801eedc6b598820dc101ad73d505e43b87f8f926;hpb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;p=mothur.git

diff --git a/removeotuscommand.h b/removeotuscommand.h
index 801eedc..3a52a39 100644
--- a/removeotuscommand.h
+++ b/removeotuscommand.h
@@ -25,8 +25,11 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "remove.otus";				}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	string getOutputFileNameTag(string, string);
 	string getHelpString();	
-	
+	string getCitation() { return "http://www.mothur.org/wiki/Remove.otus"; }
+	string getDescription()		{ return "outputs a new list file containing the otus NOT containing sequences from the groups specified"; }
+
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }	
 	
@@ -36,7 +39,6 @@ private:
 	vector<string> outputNames, Groups;
 	GroupMap* groupMap;
 	
-	void readAccnos();
 	int readListGroup();
 	int processList(ListVector*&, GroupMap*&, ofstream&, ofstream&, bool&);