X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=removeotuscommand.cpp;fp=removeotuscommand.cpp;h=25ed99eacbbd3c6dcbcad18daf5fef44ec13b746;hb=55386dddad84cc1140d736cabaf4dd0ae16f2e01;hp=3390c201809f1ddf48ba0db779e50bb34b341933;hpb=990ded2eb38078a417fa00b4fbb4d3c24f4b5046;p=mothur.git

diff --git a/removeotuscommand.cpp b/removeotuscommand.cpp
index 3390c20..25ed99e 100644
--- a/removeotuscommand.cpp
+++ b/removeotuscommand.cpp
@@ -187,7 +187,8 @@ int RemoveOtusCommand::execute(){
 		//make sure groups are valid
 		//takes care of user setting groupNames that are invalid or setting groups=all
 		SharedUtil* util = new SharedUtil();
-		util->setGroups(Groups, groupMap->namesOfGroups);
+		vector<string> allGroups = groupMap->getNamesOfGroups();
+		util->setGroups(Groups, allGroups);
 		delete util;
 		
 		if (m->control_pressed) { delete groupMap; return 0; }