X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=removelineagecommand.h;h=a756d24f583be82eac03634ebcd8496c4fd687b6;hb=ea4f373c28543cd1002b0dd7dc6e55c526647d59;hp=a5caec8e4c3e0f04ec7744489c3f27c0a495e38d;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96;p=mothur.git diff --git a/removelineagecommand.h b/removelineagecommand.h index a5caec8..a756d24 100644 --- a/removelineagecommand.h +++ b/removelineagecommand.h @@ -34,12 +34,13 @@ class RemoveLineageCommand : public Command { private: set names; vector outputNames, listOfTaxons; - string fastafile, namefile, groupfile, alignfile, listfile, taxfile, outputDir, taxons; + string fastafile, namefile, groupfile, alignfile, listfile, countfile, taxfile, outputDir, taxons; bool abort, dups; int readFasta(); int readName(); int readGroup(); + int readCount(); int readAlign(); int readList(); int readTax();