X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=removelineagecommand.cpp;h=1a3de32088d3bf1351b1005c654ac612fcd27732;hb=8173238f9f94af9baab8471de58bed7c8830948d;hp=1ea9c39af69e703f41b0aa7c9e5194eeeb0efcf0;hpb=794b3f789d6160c99b75edb9cf9af5cf3df4b9da;p=mothur.git

diff --git a/removelineagecommand.cpp b/removelineagecommand.cpp
index 1ea9c39..1a3de32 100644
--- a/removelineagecommand.cpp
+++ b/removelineagecommand.cpp
@@ -181,7 +181,11 @@ RemoveLineageCommand::RemoveLineageCommand(string option)  {
 			else if (taxfile == "not found") {  taxfile = ""; m->mothurOut("The taxonomy parameter is required for the get.lineage command."); m->mothurOutEndLine();  abort = true; }
 			
 			string usedDups = "true";
-			string temp = validParameter.validFile(parameters, "dups", false);	if (temp == "not found") { temp = "false"; usedDups = ""; }
+			string temp = validParameter.validFile(parameters, "dups", false);	
+			if (temp == "not found") { 
+				if (namefile != "") {  temp = "true";					}
+				else				{  temp = "false"; usedDups = "";	}
+			}
 			dups = m->isTrue(temp);
 			
 			taxons = validParameter.validFile(parameters, "taxon", false);