X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=removegroupscommand.h;h=103ab66197e7ecd2ea447430a0edfba3eac3c717;hb=2bb9267aa4b4ecdf8488b06605cc9f3f36fa4332;hp=63c0bff316ceda8770afdf19c90bb8f1feed7e6e;hpb=8742edef7a51b82834289e570d336f5a81ba1f2b;p=mothur.git

diff --git a/removegroupscommand.h b/removegroupscommand.h
index 63c0bff..103ab66 100644
--- a/removegroupscommand.h
+++ b/removegroupscommand.h
@@ -39,6 +39,10 @@ private:
 	bool abort;
 	vector<string> outputNames, Groups;
 	GroupMap* groupMap;
+	map<string, string> uniqueToRedundant; //if a namefile is given and the first column name is not selected
+	//then the other files need to change the unique name in their file to match.
+	//only add the names that need to be changed to keep the map search quick
+	
 	
 	int readFasta();
 	int readShared();