X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=removegroupscommand.h;fp=removegroupscommand.h;h=955d94d5090b5fc6caf4ba2a937261a173a3eb91;hb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;hp=896697aa4cfe7c9cfa7532db6e94b5f5590050ad;hpb=36a867cbd85d9c276d3c8d13f25a150bbbe2466b;p=mothur.git

diff --git a/removegroupscommand.h b/removegroupscommand.h
index 896697a..955d94d 100644
--- a/removegroupscommand.h
+++ b/removegroupscommand.h
@@ -21,19 +21,21 @@ public:
 	RemoveGroupsCommand(string);	
 	RemoveGroupsCommand();
 	~RemoveGroupsCommand(){}
-	vector<string> getRequiredParameters();
-	vector<string> getValidParameters();
-	vector<string> getRequiredFiles();
-	map<string, vector<string> > getOutputFiles() { return outputTypes; }
-	int execute();
-	void help();	
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "remove.groups";			}
+	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	string getHelpString();	
+	
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }	
+	
 	
 private:
 	set<string> names;
 	string accnosfile, fastafile, namefile, groupfile, listfile, taxfile, outputDir, groups;
 	bool abort;
 	vector<string> outputNames, Groups;
-	map<string, vector<string> > outputTypes;
 	GroupMap* groupMap;
 	
 	int readFasta();