X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=referencedb.h;fp=referencedb.h;h=5262e80d010a29da6896ada17bcfd7091dce7fec;hb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;hp=0000000000000000000000000000000000000000;hpb=1b73ff67c83892a025e597dabd9df6fe7b58206a;p=mothur.git

diff --git a/referencedb.h b/referencedb.h
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+#ifndef MYREFERENCEDB_H
+#define MYREFERENCEDB_H
+
+/*
+ *  referencedb.h
+ *  Mothur
+ *
+ *  Created by westcott on 6/29/11.
+ *  Copyright 2011 Schloss Lab. All rights reserved.
+ *
+ */
+
+
+#include "mothur.h"
+#include "sequence.hpp"
+
+/***********************************************/
+
+class ReferenceDB {
+	
+	public:
+	
+		static ReferenceDB* getInstance();
+		void clearMemory();
+	
+		bool save;
+		vector<Sequence> referenceSeqs;
+		vector< vector<float> > wordGenusProb;
+		vector<diffPair> WordPairDiffArr;
+	
+		string getSavedReference()			{ return referencefile;		}
+		void setSavedReference(string p)	{ referencefile = p;		}
+		string getSavedTaxonomy()			{ return taxonomyfile;		}
+		void setSavedTaxonomy(string p)		{ taxonomyfile = p;			}
+	
+	private:
+	
+		static ReferenceDB* myInstance;
+		ReferenceDB() { referencefile = ""; taxonomyfile = ""; save = false; }
+		ReferenceDB(const ReferenceDB&){}// Disable copy constructor
+		void operator=(const ReferenceDB&){} // Disable assignment operator
+		~ReferenceDB(){ myInstance = 0; }
+	
+		string referencefile, taxonomyfile;	
+};
+/***********************************************/
+
+#endif
+