X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=refchimeratest.cpp;h=7af9ecd0a07ec27c65b287de98e127c53a29b513;hb=571c698f527aac519f21d20563d38ec804d59876;hp=aab17e6b50d1c966f53c7d56e05c383507237a27;hpb=d8ed98e71c2da5b39b8a778e2c694a4ddff677eb;p=mothur.git

diff --git a/refchimeratest.cpp b/refchimeratest.cpp
index aab17e6..7af9ecd 100644
--- a/refchimeratest.cpp
+++ b/refchimeratest.cpp
@@ -60,7 +60,7 @@ int RefChimeraTest::analyzeQuery(string queryName, string querySeq){
 	int nMera = 0;
 	string chimeraRefSeq = "";
 	
-	if(bestSequenceMismatch - minMismatchToChimera > 3 || (minMismatchToChimera == 0 && bestSequenceMismatch != 0)){
+	if(bestSequenceMismatch - minMismatchToChimera >= 3){// || (minMismatchToChimera == 0 && bestSequenceMismatch != 0)){
 	
 		nMera = 2;
 		chimeraRefSeq = stitchBimera(leftParentBi, rightParentBi, breakPointBi);