X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=refchimeratest.cpp;fp=refchimeratest.cpp;h=701fb9eb6a711fd82108d6694790b02992bc6816;hb=8159f34321e2c771638059b59a986caca9f3ab60;hp=c618e788386550f40cf83c6a328342022e47f243;hpb=7aa301dfa67cfcb5b00c6b4e38a7ad56eb8337db;p=mothur.git

diff --git a/refchimeratest.cpp b/refchimeratest.cpp
index c618e78..701fb9e 100644
--- a/refchimeratest.cpp
+++ b/refchimeratest.cpp
@@ -128,7 +128,7 @@ int RefChimeraTest::analyzeUnalignedQuery(string queryName, string querySeq, ofs
     
     for(int i=0;i<numRefSeqs;i++){
         double length = 0;
-        int diffs = alignQueryToReferences(querySeq, referenceSeqs[i], queryAlign[i], refAlign[i], length);
+        double diffs = alignQueryToReferences(querySeq, referenceSeqs[i], queryAlign[i], refAlign[i], length);
         if(diffs < bestRefDiffs){
             bestRefDiffs = diffs;
             bestRefLength = length;
@@ -324,7 +324,7 @@ double RefChimeraTest::alignQueryToReferences(string query, string reference, st
         		
 		int end = refLength - 1;
         int maxRow = 0;
-        double maxRowValue = -100000000000;
+        double maxRowValue = -2147483647;
         for(int i=0;i<queryLength;i++){
             if(alignMatrix[i][end] > maxRowValue){
                 maxRow = i;
@@ -334,7 +334,7 @@ double RefChimeraTest::alignQueryToReferences(string query, string reference, st
         
         end = queryLength - 1;
         int maxColumn = 0;
-        double maxColumnValue = -100000000000;
+        double maxColumnValue = -2147483647;
 
         for(int j=0;j<refLength;j++){
             if(alignMatrix[end][j] > maxColumnValue){