X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readtreecommand.h;h=97391d0982bbadb437ebe13318c47babeca4a981;hb=c921bbf0623d5200f69b5d83b3c70ea533c69412;hp=5d5b9b5eb74f17983d58fd55610218d2c23a8866;hpb=afcbef163b4f32d0ff25a834cb9af8eef8d06ffa;p=mothur.git

diff --git a/readtreecommand.h b/readtreecommand.h
index 5d5b9b5..97391d0 100644
--- a/readtreecommand.h
+++ b/readtreecommand.h
@@ -19,7 +19,12 @@ class GlobalData;
 class ReadTreeCommand : public Command {
 public:
 	ReadTreeCommand(string);
+	ReadTreeCommand() {}
 	~ReadTreeCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();
 	void help();
 	
@@ -30,6 +35,8 @@ private:
 	string filename, treefile, groupfile, namefile;
 	bool abort;
 	map<string, string> nameMap;
+	vector<string> outputNames;
+	map<string, vector<string> > outputTypes;
 	
 	int readNamesFile();
 	int numUniquesInName;