X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readtreecommand.cpp;h=88e34ff5c7e3f2c243eb7e0dac56b7d11fcb39b4;hb=786d5631d9cd5baa6ed6ef16f8b4b384cbc7470f;hp=b030542ef8f7e5933f2bf32c4c6bf6ba9e051ee0;hpb=753dc84cf289b1d5dc0ca5b0c043640927aa951a;p=mothur.git

diff --git a/readtreecommand.cpp b/readtreecommand.cpp
index b030542..88e34ff 100644
--- a/readtreecommand.cpp
+++ b/readtreecommand.cpp
@@ -33,6 +33,7 @@ ReadTreeCommand::ReadTreeCommand(string option){
 				if (validParameter.isValidParameter(it->first, myArray, it->second) != true) {  abort = true;  }
 			}
 			
+			globaldata->runParse = true;
 			globaldata->newRead();
 			
 			//check for required parameters