X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readtreecommand.cpp;h=405de84daef015d5edb37110ab35f0a2c98bbbb3;hb=9651e8e7172d86707b34af15e95ec60ad4c3c3f9;hp=68f1f928bc52d5c920ac4126bb4fa67fd6ca3783;hpb=8f92612d5a69f5245e63a20657e7d93519c0769e;p=mothur.git

diff --git a/readtreecommand.cpp b/readtreecommand.cpp
index 68f1f92..405de84 100644
--- a/readtreecommand.cpp
+++ b/readtreecommand.cpp
@@ -43,8 +43,11 @@ ReadTreeCommand::~ReadTreeCommand(){
 
 int ReadTreeCommand::execute(){
 	try {
-	
-		read->read(); 
+		int readOk;
+		
+		readOk = read->read(); 
+		
+		if (readOk != 0) { cout << "Read Terminated." << endl; globaldata->gTree.clear(); delete globaldata->gTreemap; return 0; }
 		
 		vector<Tree*> T = globaldata->gTree;
 		
@@ -52,7 +55,7 @@ int ReadTreeCommand::execute(){
 		for (int i = 0; i < T.size(); i++) {
 			T[i]->assembleTree();
 		}
-T[0]->createNewickFile("treeout");		
+
 		return 0;
 	}
 	catch(exception& e) {