X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readtree.h;fp=readtree.h;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=6b074de839070a86bd3e010bbf222a7ec4011dce;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/readtree.h b/readtree.h
deleted file mode 100644
index 6b074de..0000000
--- a/readtree.h
+++ /dev/null
@@ -1,67 +0,0 @@
-#ifndef READTREE_H
-#define READTREE_H
-/*
- *  readtree.h
- *  Mothur
- *
- *  Created by Sarah Westcott on 1/22/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "mothur.h"
-#include "tree.h"
-
-#define MAX_LINE		513
-#define SKIPLINE(f,c)	{while((c=f.get())!=EOF && ((c) != '\n')){}}
-
-class Tree;
-
-/****************************************************************************/
-
-class ReadTree {
-	public:
-		ReadTree(); 
-		virtual ~ReadTree() {};
-		
-		virtual int read(TreeMap*) = 0;
-		int readSpecialChar(istream&, char, string);
-		int readNodeChar(istream& f);
-		float readBranchLength(istream& f);
-	
-		vector<Tree*> getTrees() { return Trees; }
-		int AssembleTrees(map<string, string>);
-		
-	protected:
-		vector<Tree*> Trees;
-		TreeMap* treeMap;
-		int numNodes, numLeaves;
-		MothurOut* m;
-		
-		
-};
-
-/****************************************************************************/
-
-class ReadNewickTree : public ReadTree {
-	
-public:
-	ReadNewickTree(string file) : treeFile(file) { m->openInputFile(file, filehandle); readOk = 0; } 
-	~ReadNewickTree() {};
-	int read(TreeMap*);
-	
-private:
-	Tree* T;
-	int readNewickInt(istream&, int&, Tree*, TreeMap*);
-	int readTreeString(TreeMap*);
-	string nexusTranslation(TreeMap*);
-	ifstream filehandle;
-	string treeFile;
-	string holder;
-	int readOk;  // readOk = 0 means success, readOk = 1 means errors.
-	
-};
-
-/****************************************************************************/
-
-#endif