X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readphylipvector.h;fp=readphylipvector.h;h=aa056c7d74fd351f65e43d0fa0b0613d9d34eeeb;hb=d04f948b1a2a1a2984fc4a45d04403b8c121c5bc;hp=0000000000000000000000000000000000000000;hpb=5b3bedc6fbfed63854cc6a7d47454580b2734c08;p=mothur.git

diff --git a/readphylipvector.h b/readphylipvector.h
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+#ifndef READPHYLIPVECTOR_H
+#define READPHYLIPVECTOR_H
+
+/*
+ *  readphylipvector.h
+ *  mothur
+ *
+ *  Created by westcott on 1/11/11.
+ *  Copyright 2011 Schloss Lab. All rights reserved.
+ *
+ */
+
+
+#include "mothur.h"
+#include "mothurout.h"
+
+/******************************************************/
+
+class ReadPhylipVector {
+	
+public:
+	ReadPhylipVector(string); //phylipfile - lt or square
+	~ReadPhylipVector() {}
+	vector<string> read(vector< vector<double> >&); //pass in matrix to fill with values, returns vector of strings containing names in phylipfile
+	vector<string> read(vector<seqDist>&); //pass in matrix to fill with values, returns vector of strings containing names in phylipfile
+	
+private:
+	string distFile;
+	MothurOut* m;
+};
+
+/******************************************************/
+
+#endif