X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readotucommand.cpp;h=2df74e4e6c3283db6808754ede700c66d9c56b6e;hb=786d5631d9cd5baa6ed6ef16f8b4b384cbc7470f;hp=ba7eae42a668e7fa9bf3a9f8d33c4746b55ce810;hpb=753dc84cf289b1d5dc0ca5b0c043640927aa951a;p=mothur.git

diff --git a/readotucommand.cpp b/readotucommand.cpp
index ba7eae4..2df74e4 100644
--- a/readotucommand.cpp
+++ b/readotucommand.cpp
@@ -64,6 +64,7 @@ ReadOtuCommand::ReadOtuCommand(string option){
 				globaldata->setGroupFile(groupfile); 
 				groupMap = new GroupMap(groupfile);
 				groupMap->readMap();
+				globaldata->gGroupmap = groupMap;
 			}
 
 			//you are doing a list and group shared
@@ -168,10 +169,7 @@ int ReadOtuCommand::execute(){
 		
 		//read->read(&*globaldata); 
 		if (globaldata->getFormat() == "shared") {
-			groupMap->readMap();
-			
-			//if (globaldata->gGroupmap != NULL) { delete globaldata->gGroupmap;  }
-			globaldata->gGroupmap = groupMap;
+			//groupMap->readMap();
 			
 			parselist = new ParseListCommand();
 			parselist->execute();