X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readotu.cpp;h=286a2be271a4a7bb2225a71c7081b1a5c8eb4571;hb=753dc84cf289b1d5dc0ca5b0c043640927aa951a;hp=09a6c4cd00f58d5fc09424972c3f6ae93c88542d;hpb=de2dc9fb831f569b823031d0730f5a0d739e8290;p=mothur.git

diff --git a/readotu.cpp b/readotu.cpp
index 09a6c4c..286a2be 100644
--- a/readotu.cpp
+++ b/readotu.cpp
@@ -31,21 +31,24 @@ void ReadOTUFile::read(GlobalData* globaldata){
 		}else {//there is an orderfile
 			input = new InputData(philFile, globaldata->getOrderFile(), globaldata->getFormat());
 		}
-		
+//cout << "made it here"	<< endl;	
 		//memory leak prevention
 		//if (globaldata->ginput != NULL) { delete globaldata->ginput;  }
 		globaldata->ginput = input;	//saving to be used by collector and rarefact commands.
-		
+//cout << "after input" << endl;		
 		if ((globaldata->getFormat() == "list") || (globaldata->getFormat() == "rabund") || (globaldata->getFormat() == "sabund")) {//you are reading a list, rabund or sabund file for collect, rarefaction or summary.
 			order = input->getOrderVector();
 			//memory leak prevention
 			//if (globaldata->gorder != NULL) { delete globaldata->gorder;  }
 			globaldata->gorder = order;	//saving to be used by collect and rarefact commands.
 			sabund = inputSabund->getSAbundVector(); 
+			//if (globaldata->sabund != NULL) { delete globaldata->sabund;  }
 			globaldata->sabund = sabund; //saving to be used by summary command.
 			rabund = inputRabund->getRAbundVector(); 
+			//if (globaldata->rabund != NULL) { delete globaldata->rabund;  }
 			globaldata->rabund = rabund; //saving to be used by heatmap.bin command.
 			list = inputList->getListVector();
+			//if (globaldata->gListVector != NULL) { delete globaldata->gListVector;  }
 			globaldata->gListVector = list;
 
 		}else if (globaldata->getFormat() == "shared") {