X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readotu.cpp;h=00448f8a24cced84a346dfedc434ffa838698371;hb=dd173a49e37f6bae73a63c32dd7c98d317bb4a79;hp=84132ae5bdecda6f1e967dffdbeb284cfd281f23;hpb=4ba6188707e67c638ea5ee3c787d5d07ccd07e3e;p=mothur.git

diff --git a/readotu.cpp b/readotu.cpp
index 84132ae..00448f8 100644
--- a/readotu.cpp
+++ b/readotu.cpp
@@ -12,8 +12,8 @@
 /***********************************************************************/
 
 ReadOTUFile::ReadOTUFile(string pf): philFile(pf){
-	
-	//openInputFile(philFile, fileHandle);
+	m = MothurOut::getInstance();
+	//m->openInputFile(philFile, fileHandle);
 }
 
 /***********************************************************************/
@@ -35,7 +35,7 @@ void ReadOTUFile::read(GlobalData* globaldata){
 		//memory leak prevention
 		//if (globaldata->ginput != NULL) { delete globaldata->ginput;  }
 		globaldata->ginput = input;	//saving to be used by collector and rarefact commands.
-	
+
 		if ((globaldata->getFormat() == "list") || (globaldata->getFormat() == "rabund") || (globaldata->getFormat() == "sabund")) {//you are reading a list, rabund or sabund file for collect, rarefaction or summary.
 
 //cout << input << '\t' << globaldata << endl;
@@ -70,7 +70,7 @@ void ReadOTUFile::read(GlobalData* globaldata){
 		}
 	}
 	catch(exception& e) {
-		errorOut(e, "ReadOTUFile", "read");
+		m->errorOut(e, "ReadOTUFile", "read");
 		exit(1);
 	}
 }