X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readmatrix.hpp;fp=readmatrix.hpp;h=49ae2946fda42c49c8475b040ac8f7e3f5617499;hb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;hp=0000000000000000000000000000000000000000;hpb=1b73ff67c83892a025e597dabd9df6fe7b58206a;p=mothur.git

diff --git a/readmatrix.hpp b/readmatrix.hpp
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+#ifndef READMATRIX_HPP
+#define READMATRIX_HPP
+
+/*
+ *  readmatrix.hpp
+ *  
+ *
+ *  Created by Pat Schloss on 8/13/08.
+ *  Copyright 2008 Patrick D. Schloss. All rights reserved.
+ *
+ */
+
+#include "mothur.h"
+#include "listvector.hpp"
+#include "sparsematrix.hpp"
+#include "nameassignment.hpp"
+
+class SparseMatrix;
+
+class ReadMatrix {
+
+public:
+	ReadMatrix(){	D = new SparseMatrix();	 m = MothurOut::getInstance();  }
+	virtual ~ReadMatrix() {}
+	virtual int read(NameAssignment*){ return 1; }
+	
+	void setCutoff(float c)			{	cutoff = c;		}
+	SparseMatrix* getMatrix()		{	return D;		}
+	ListVector* getListVector()		{	return list;	}
+//	OrderVector* getOrderVector()   {	return order;	}
+
+	int successOpen;
+	
+protected:
+	SparseMatrix* D;
+	ListVector* list;
+	float cutoff;
+	MothurOut* m;
+	bool sim;
+};
+
+
+
+#endif