X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readdistcommand.h;h=937ca3f0797c58bc24dc3a239ac5f7c0e4624339;hb=813f0516e9c7533859f57ebe6d7b8854896bf009;hp=981afa339308199105a0082c8458dd0b1ed7295c;hpb=9651e8e7172d86707b34af15e95ec60ad4c3c3f9;p=mothur.git

diff --git a/readdistcommand.h b/readdistcommand.h
index 981afa3..937ca3f 100644
--- a/readdistcommand.h
+++ b/readdistcommand.h
@@ -26,9 +26,10 @@ class GlobalData;
 
 class ReadDistCommand : public Command {
 public:
-	ReadDistCommand();
+	ReadDistCommand(string);
 	~ReadDistCommand();
 	int execute();
+	void help();
 	
 private:
 	GlobalData* globaldata;
@@ -37,8 +38,12 @@ private:
 	ReadMatrix* read;
 	FullMatrix* matrix;
 	GroupMap* groupMap;
-	string filename, format, method;
+	string distFileName, format, method;
+	string phylipfile, columnfile, namefile, groupfile, outputDir;
 	NameAssignment* nameMap;
+
+	bool abort, sim;
+
 };
 
 #endif