X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readdistcommand.cpp;h=c600eb86c969303f608b6a440dedb77af3e50b1d;hb=fd5f17bcbe5fadab2c525f3d1fcfd1d79a60ae72;hp=0445eec63328e2cf7a646f1cc662bb36fdd3bb98;hpb=260ae19c36cb11a53ddc5a75b5e507f8dd8b31d6;p=mothur.git

diff --git a/readdistcommand.cpp b/readdistcommand.cpp
index 0445eec..c600eb8 100644
--- a/readdistcommand.cpp
+++ b/readdistcommand.cpp
@@ -12,6 +12,42 @@
 #include "readcolumn.h"
 #include "readmatrix.hpp"
 
+//**********************************************************************************************************************
+vector<string> ReadDistCommand::getValidParameters(){	
+	try {
+		string Array[] =  {"phylip", "column", "name", "cutoff", "precision", "group","outputdir","inputdir","sim"};
+		vector<string> myArray (Array, Array+(sizeof(Array)/sizeof(string)));
+		return myArray;
+	}
+	catch(exception& e) {
+		m->errorOut(e, "ReadDistCommand", "getValidParameters");
+		exit(1);
+	}
+}
+//**********************************************************************************************************************
+vector<string> ReadDistCommand::getRequiredParameters(){	
+	try {
+		string Array[] =  {"phylip","column","or"};
+		vector<string> myArray (Array, Array+(sizeof(Array)/sizeof(string)));
+		return myArray;
+	}
+	catch(exception& e) {
+		m->errorOut(e, "ReadDistCommand", "getRequiredParameters");
+		exit(1);
+	}
+}
+//**********************************************************************************************************************
+vector<string> ReadDistCommand::getRequiredFiles(){	
+	try {
+		vector<string> myArray;
+		return myArray;
+	}
+	catch(exception& e) {
+		m->errorOut(e, "ReadDistCommand", "getRequiredFiles");
+		exit(1);
+	}
+}
+//**********************************************************************************************************************
 ReadDistCommand::ReadDistCommand(string option) {
 	try {
 		globaldata = GlobalData::getInstance();
@@ -208,8 +244,6 @@ int ReadDistCommand::execute(){
 		time_t start = time(NULL);
 		size_t numDists = 0;
 		
-		vector<string> outputNames;
-		
 		if (format == "matrix") {
 			ifstream in;
 			m->openInputFile(distFileName, in);