X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readdistcommand.cpp;h=8bf6996333b246814a28009d309ab8f3b6bf8718;hb=2009a1a1f47e7467094d844e7c07ab8ddf7bb447;hp=8dadc7e705c8fe78a9f4b47a3ed1479607745390;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git

diff --git a/readdistcommand.cpp b/readdistcommand.cpp
index 8dadc7e..8bf6996 100644
--- a/readdistcommand.cpp
+++ b/readdistcommand.cpp
@@ -121,7 +121,7 @@ ReadDistCommand::ReadDistCommand(string option) {
 			//get user cutoff and precision or use defaults
 			string temp;
 			temp = validParameter.validFile(parameters, "precision", false);		if (temp == "not found") { temp = "100"; }
-			convert(temp, precision); 
+			m->mothurConvert(temp, precision); 
 			
 			temp = validParameter.validFile(parameters, "sim", false);				if (temp == "not found") { temp = "F"; }
 			sim = m->isTrue(temp); 
@@ -197,7 +197,7 @@ int ReadDistCommand::execute(){
 				m->openOutputFile(newGroupFile, outGroups);
 				
 				for (int i = 0; i < matrix->getNumSeqs(); i++) {
-					if (m->control_pressed) { delete groupMap; delete matrix; outGroups.close(); remove(newGroupFile.c_str()); return 0; }
+					if (m->control_pressed) { delete groupMap; delete matrix; outGroups.close(); m->mothurRemove(newGroupFile); return 0; }
 					
 					Names temp = matrix->getRowInfo(i);
 					outGroups << temp.seqName << '\t' << temp.groupName << endl;
@@ -214,7 +214,7 @@ int ReadDistCommand::execute(){
 				groupMap = new GroupMap(groupfile);
 				groupMap->readMap();
 				
-				if (m->control_pressed) { delete groupMap; delete matrix; remove(newGroupFile.c_str()); return 0; }
+				if (m->control_pressed) { delete groupMap; delete matrix; m->mothurRemove(newGroupFile); return 0; }
 	
 				globaldata->gGroupmap = groupMap;
 			}