X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readdistcommand.cpp;h=4ea630f476ae99cef0b9ef8f65b86a2f44a10873;hb=0b99c6b6ea875e13febda76903fd4d9cda7add7d;hp=414f33087738ba355ad5ff51c2e89349d41b21f9;hpb=dabb32850eae34e26b066a7da55716ad685786a3;p=mothur.git

diff --git a/readdistcommand.cpp b/readdistcommand.cpp
index 414f330..4ea630f 100644
--- a/readdistcommand.cpp
+++ b/readdistcommand.cpp
@@ -22,7 +22,7 @@ ReadDistCommand::ReadDistCommand(string option) {
 		
 		else {
 			//valid paramters for this command
-			string Array[] =  {"phylip", "column", "name", "cutoff","hard", "precision", "group","outputdir","inputdir","sim"};
+			string Array[] =  {"phylip", "column", "name", "cutoff", "precision", "group","outputdir","inputdir","sim"};
 			vector<string> myArray (Array, Array+(sizeof(Array)/sizeof(string)));
 			
 			OptionParser parser(option);
@@ -126,12 +126,9 @@ ReadDistCommand::ReadDistCommand(string option) {
 			sim = isTrue(temp); 
 			globaldata->sim = sim;
 			
-			temp = validParameter.validFile(parameters, "hard", false);			if (temp == "not found") { temp = "F"; }
-			hard = isTrue(temp);
-			
 			temp = validParameter.validFile(parameters, "cutoff", false);			if (temp == "not found") { temp = "10"; }
 			convert(temp, cutoff); 
-			if (!hard) {  cutoff += (5 / (precision * 10.0));  }
+			cutoff += (5 / (precision * 10.0)); 
 			
 			if (abort == false) {
 				distFileName = globaldata->inputFileName;