X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readcluster.h;h=9ca2a1b14010bf518e2bc366e4df9d77285361eb;hb=095a4c7aed0cf5ef79eaf28f0d79d3aa51c2811e;hp=4574c8071616b47f389527f2fd90a5236326f4cd;hpb=aa9238c0a9e6e7aa0ed8b8b606b08ad4fd7dcfe3;p=mothur.git

diff --git a/readcluster.h b/readcluster.h
index 4574c80..9ca2a1b 100644
--- a/readcluster.h
+++ b/readcluster.h
@@ -21,7 +21,7 @@
 class ReadCluster {
 	
 public:
-	ReadCluster(string, float);
+	ReadCluster(string, float, string, bool);
 	~ReadCluster();
 	int read(NameAssignment*);
 	string getOutputFile() { return OutPutFile; }
@@ -30,11 +30,12 @@ public:
 	
 private:
 	GlobalData* globaldata;
-	string distFile;
+	string distFile, outputDir;
 	string OutPutFile, format;
 	ListVector* list;
 	float cutoff;
 	MothurOut* m;
+	bool sortWanted;
 	
 	int convertPhylip2Column(NameAssignment*);
 };