X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readcluster.h;fp=readcluster.h;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=a838dace17f35547421c03b0dfc8dcc6efdc2317;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git diff --git a/readcluster.h b/readcluster.h deleted file mode 100644 index a838dac..0000000 --- a/readcluster.h +++ /dev/null @@ -1,44 +0,0 @@ -#ifndef READCLUSTER_H -#define READCLUSTER_H -/* - * readcluster.h - * Mothur - * - * Created by westcott on 10/28/09. - * Copyright 2009 Schloss Lab. All rights reserved. - * - */ - - -#include "mothur.h" -#include "nameassignment.hpp" -#include "listvector.hpp" - - -/******************************************************/ - -class ReadCluster { - -public: - ReadCluster(string, float, string, bool); - ~ReadCluster(); - int read(NameAssignment*&); - string getOutputFile() { return OutPutFile; } - void setFormat(string f) { format = f; } - ListVector* getListVector() { return list; } - -private: - string distFile, outputDir; - string OutPutFile, format; - ListVector* list; - float cutoff; - MothurOut* m; - bool sortWanted; - - int convertPhylip2Column(NameAssignment*&); -}; - -/******************************************************/ - -#endif -