X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readcluster.cpp;fp=readcluster.cpp;h=c8a8bc7b5074bf91ea46e2c30f2364a509d2c5ff;hb=e189982e0a9b7352ad57cc38ccee675f128be22e;hp=acbebaeece94faf995cd9d1a26112e40185314b8;hpb=fdc1f6eaf544f695fc1511f24bddd7e6069c33ba;p=mothur.git

diff --git a/readcluster.cpp b/readcluster.cpp
index acbebae..c8a8bc7 100644
--- a/readcluster.cpp
+++ b/readcluster.cpp
@@ -11,11 +11,12 @@
 
 /***********************************************************************/
 
-ReadCluster::ReadCluster(string distfile, float c){
+ReadCluster::ReadCluster(string distfile, float c, string o){
 		globaldata = GlobalData::getInstance();
 		m = MothurOut::getInstance();
         distFile = distfile;
 		cutoff = c;
+		outputDir = o;
 }
 
 /***********************************************************************/
@@ -28,7 +29,7 @@ int ReadCluster::read(NameAssignment* nameMap){
 		
 		if (m->control_pressed) { return 0; }
 		
-		OutPutFile = sortFile(distFile);
+		OutPutFile = sortFile(distFile, outputDir);
 		
 		return 0;