X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readblast.h;h=fd32380c20c1a7145a8c65d07700b54d2d5bc63b;hb=e0ce7cbc93d7d2fbb753ca694182db092a0ea0e7;hp=128c144fc3d29109453331c059b478c18f7a6bfe;hpb=b5a791c81d432082bf38755a08b33863f255341d;p=mothur.git

diff --git a/readblast.h b/readblast.h
index 128c144..fd32380 100644
--- a/readblast.h
+++ b/readblast.h
@@ -25,7 +25,7 @@ public:
 	ReadBlast(string, float, float, int, bool, bool); //blastfile, cutoff, penalty, length of overlap, min or max bsr, hclusterWanted
 	~ReadBlast() {}
 	
-	void read(NameAssignment*);
+	int read(NameAssignment*);
 	SparseMatrix* getDistMatrix()		{	return matrix;		}
 	vector<seqDist> getOverlapMatrix()	{	return overlap;		}
 	string getOverlapFile()				{	return overlapFile;	}
@@ -40,8 +40,9 @@ private:
 	
 	SparseMatrix* matrix;
 	vector<seqDist> overlap;
+	MothurOut* m;
 	
-	void readNames(NameAssignment*);
+	int readNames(NameAssignment*);
 };
 
 /*******************************************************************************************/